Portfolio | INCF - International Neuroinformatics Coordinating Facility

RRID:SCR_016196

Neuroscience information exchange format (NIX) data model allows storing fully annotated scientific datasets, i.e. the data together with rich metadata and their relations in a consistent, comprehensive format. Its aim is to achieve standardization… Read more

NWB:N 2.0

RRID:SCR_015242

Neurodata Without Borders (NWB) is a data standard for neurophysiology, providing neuroscientists with a common standard to share, archive, use, and build analysis tools for neurophysiology data. NWB is designed to store a variety of neurophysiology… Read more

NeuroML

RRID:SCR_003083

NeuroML is a simulator-independent, XML-based standardized model description language for computational neuroscience that provides a common data format for defining and exchanging descriptions of neuronal cell and network models. NeuroML focuses on… Read more

BIDS

RRID:SCR_016124

The Brain Imaging Data Structure (BIDS) is a standard prescribing a formal way to name and organize MRI data and metadata in a file system that simplifies communication and collaboration between users and enables easier data validation and software… Read more

PyNN

RRID: SCR_002715

PyNN is a simulator-independent language for building neuronal network models. The PyNN API aims to support modelling at a high-level of abstraction (populations of neurons, layers, columns and the connections between them) while still allowing… Read more

NIDM

COMMITTEE REVIEW

RRID:SCR_013667

NeuroImaging Data Model (NIDM)-Results provides a representation of mass univariate neuroimaging analysis results, unified across analysis software packages. Implementation of NIDM-Results within FSL and SPM, two of the main neuroimaging software… Read more

FAIR software

Research Resource Identifier

RRID: NA

The Five Recommendations for FAIR Software aim to encourage the greater adoption of FAIR principles by providing a set of starting recommendations that researchers can use to improve the quality, reach, and reproducibility of their software.The… Read more

RRID:SCR_005400

The RRID is a Persistent Unique Identifier assigned to help researchers cite key resources (antibodies, model organisms, and software projects) in the biomedical literature to improve transparency of research methods. They are machine readable, free… Read more

DAQCORD

RRID:SCR_017395

The Data Acquisition, Quality and Curation for Observational Research Designs (DAQCORD) Guidelines are the first comprehensive set of data quality indicators for large, clinical observational studies. They were developed around the needs of… Read more

NEO

RRID:SCR_000634

Neo is an object model for handling electrophysiology data in multiple formats. It is suitable for representing data acquired from electroencephalographic, intracellular, or extracellular recordings, or generated from simulations. Neo has been… Read more

COBIDAS

RRID: NA

The purpose of this best practice is to elaborate the principles of open and reproducible research for neuroimaging using Magnetic Resonance Imaging (MRI). It covers: 1. experimental design reporting, 2. image acquisition reporting, 3. preprocessing… Read more

MBF File Format v 4.0

RRID:N/A

The neuromorphological file format balances structure with flexibility by storing each modeled object as a unique data element and providing mechanisms for grouping any number and type of data elements. File-level metadata is retained to provide… Read more

MDAR

The MDAR framework establishes a minimum set of requirements in transparent reporting applicable to studies in the life sciences. The MDAR checklist is a tool for authors, editors and others seeking to adopt the MDAR framework for transparent… Read more

odML