This working group serves users and use cases of MATLAB (and Simulink) for cellular-scale neuroscience, including live recordings (e.g., neural probes, calcium imaging) and anatomical imaging (e.g., connectomics), and their associated data streams (e.g., behavioral data), computational methods (e.g., spike sorting, cellular source separation, neural simulation), and research resources/infrastructure (e.g., data archives, data standards). Cellular-scale neuroscience seeks to understand the function and structure of the central & peripheral nervous system at the levels of neurons & glia, including how they connect and interact as modules/networks at larger scales (aka systems neuroscience) and across select modules/networks distributed across the brain/body (the “mesoscale”).
This working group serves the developers and users of MatNWB, the MATLAB interface to the INCF-endorsed Neurodata without Borders (NWB) data standard. Neurodata Without Borders (NWB) is a data standard for neurophysiology, providing neuroscientists with a common standard to share, archive, use, and build analysis tools for neurophysiology data. NWB is designed to store a variety of neurophysiology data, including data from intracellular and extracellular electrophysiology experiments, data from optical physiology experiments, and tracking and stimulus data.
ImageJ is a public domain Java image processing program extensively used in life sciences. The program was designed with an open architecture that provides extensibility via Java plugins. User-written plugins make it possible to solve almost any image processing or analysis problem or integrate the program with 3rd party software. The Active Segmentation plugin is a complete redesign of Trainable Weka Segmentation (TWS) for ImageJ. Learn more at: http://neuroinformatics.be/