2023 |
Integration of automated model testing and parameter fitting tools for neuroscience applications |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
D-GNNs: developing DevoGraph for computational developmental biology |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Replicating Auditory Steady-State Response (ASSR) in an auditory cortex model |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
A social web tool to facilitate rating and commenting on research reports |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Implementing CSV data browser and querying component |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Improving graphical interface and user experience on AnalySim |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Exploring open-source sustainability via agent-based modelling |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Develop IO routines for HNN-core outputs |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Improving LORIS data platform |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
INCF/OCNS Working Group on Computational Neuroscience Software |
Best practices in software development (expected 2023)
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2023 |
Efficient app-based measurement of visual functions in infants and young children |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Improving automatic reviewer assignment using large language models for NBDT journal |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
INCF Working Group on Standardized Data |
- Recommended directory structure and file naming convention (expected)
- Recommended organization of the metadata (expected)
- Specifications of file formats for the data and metadata (expected)
- Finalization of BIDS Extension Proposal (BEP032) (expected)
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2023 |
A structural connectivity widget for The Virtual Brain |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
INCF/OHBM Working Group on checklists from transparent methods reporting in neuroscience (eCobidas) |
- COBIDAS checklist web app (expected)
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2023 |
D-GNNs: developing DevoGraph for computational developmental biology (OpenWorm Foundation) |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
INCF Working Group on Electrophysiology Stimulation Ontology |
- Prototype visualization or validation/comparison tool (expected)
- so users can verify that the stimuli as stored in the file are as they intended
- for archives, so stimuli can be visualized when browsing datasets
- Draft proposal best practices for use of the ontology for archives (expected)
- Draft proposal for extension for parameterized 2D visual stimuli (expected)
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2023 |
Virtual reality for distributed research |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
INCF Working Group on Reproducibility and Best Practices in Human Brain Imaging |
- BIDS PET imaging specification (expected)
- BIDS NIRS specification (expected)
- BIDS eye-tracking specification (expected)
- BIDS-matlab (expected)
- Enhancement of the BIDS-starter kit (expected)
- NI-DM IPython Notebooks (expected)
- NIDASH Ontology (expected)
- Developing ReproLake: NIDM metadata repository for a number of publicly-available datasets and derived data (expected )
- Develop the NIDM model further: harmonized terminologies, additional tools, provenance for pipelines (expected)
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2023 |
INCF Working Group on Standardized Representations of Network Structures |
- Converting TVB models to equivalents in NeuroML/LEMS (expected)
- Extend NeuroML to incorporate rate based/neural mass models (expected)
- Convert multi area cortical model to standardised format (expected)
- Whole brain connectivity datasets in standardised formats (expected)
- Incorporate NetPyNE UI into OSB (expected)
- Improve interoperability of NeuroML/NineML (expected)
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2023 |
INCF Working Group on Cellular Neuroscience with MATLAB |
- Google Doc per sub-group conveying recommendations to MathWorks Neuroscience team of 2+ priority existing MATLAB community toolbox projects, plus important new MATLAB community toolbox project opportunities, if any
- Google Doc conveying recommendations to MathWorks product teams of 2+ priority enhancements or issue fixes for the MATLAB and Simulink product families
- Written recommendations of 1+ key project improvements for 2+ identified priority MATLAB community toolbox projects
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2023 |
INCF Working Group on ARTEM-IS |
- A human-readable template for description of a study, as would be suitable for submission as a supplementary document at the time of journal article submission, or alongside a preregistration (expected)
- App functionality to allow export of a completed template into the following (expected):
- A machine-readable data file
- A human-readable output
- App functionality to allow import of previously filled template information (e.g., Equipment fields from an equipment vendor; a research team’s standard operating procedure; expected)
- App-integrated ‘help’ functions (expected)
- Guidance to support a user in completing the template (expected)
- Standalone explanation & elaboration documents (expected)
- Training materials for researchers new to the field of EEG (expected)
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2023 |
INCF Working Group on NWB |
- Written recommendation documents among development groups (MatNWB, core NWB, MathWorks)
- Written recommendations to MathWorks Neuroscience team for MatNWB community toolbox support project concept(s) (2022)
- Establishment of curated reference collection of MatNWB DANDIset examples
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2023 |
INCF Working Group on NIDM (NeuroImaging Data Model) |
- NeuroImaging Data Model development: further develop the model to include harmonized terminology and provenance information for pipelines and datasets (expected)
- Develop input interfaces to save information in standardized provenance model (eg. ReproSchema) (expected)
- Developing ReproLake: NIDM metadata representation for a number of datasets and derived data will be made available in "ReproLake" hosted by NIF (expected)
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2023 |
INCF Working Group on Neuroimaging Quality Control |
- Manual for QC of neuroimaging data (expected)
- Protocols of QC use cases (expected)
- QC tools (expected)
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2023 |
INCF Working Group on Psychophysics Software with MATLAB |
- Organize a public session for psychophysics software community projects to showcase new developments
- Google Doc conveying recommendations for priority directions for established psychophysics MATLAB community toolboxes (e.g., Psychophysics Toolbox)
- Google Doc conveying recommendations for emerging psychophysics software needs, which might be served by new or emerging MATLAB community toolboxes, commercial offerings, and/or MathWorks product updates
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2023 |
Image feature and classification database |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Integrate Zenodo API with The Virtual Brain |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Code editor support for Brian model equations |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Adding new workers and resource management to new dataflow engine written in Python: Pydra |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Technical Improvements to enhance the usability of The Turing Way chapters by different user groups |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Impact visualization portal for global neuroinformatics community |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Generalize parameter optimization routines for the Human NeoCortical Neurosolver |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Conversion of public neurophysiology datasets to Neurodata Without Borders (NWB) format |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2023 |
Optimization of the computations of HOIs and integration in the Frites Python package |
- Development and build of Sci-commons, a portal for users to anonymously review, comment on, and rate submitted article
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2021 |
INCF/OCNS Working Group on Computational Neuroscience Software |
- Regular developer sessions for computational neuroscience tool developers
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2018 |
INCF Working Group on Reproducibility and Best Practices in Human Brain Imaging |
- BIDS training materials (2018)
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