Back
   

INCF Digital Atlasing Workshop

Portopia Hotel, Nunobiki Room
10-1,6 Chome
Minatojima Nakamachi, Chuo

Kobe
Japan

September 2, 2010
Digital atlasing
Neuroimaging
Infrastructural and portal services
  • INCF Digital Atlasing Workshop
    34.6668888 135.2114751
Document Actions
Print this Add to favorites

Contact

DA-Workshop@incf.org

Additional information

The day-long Workshop will be held Sept. 2 at the Portopia Hotel (Nunobiki Room) and is open to everyone. Progress of the program towards interoperability among diverse atlasing efforts will be featured, including Waxholm Space (WHS) as a spatial standard for the mouse brain and INCF Digital Atlasing Infrastructure (DAI) which supports this interoperability. Highlights include demonstrations and hands-on activities with software tools, transformation services, standards development, and information about how others might take advantage of this framework. Limited spots are available. To register, please email DA-Workshop@incf.org.


Preliminary schedule for the Workshop

  • 09:00 - 09:30   Overview and Goals of the INCF Digital Atlasing Program
  • 09:30 - 10:00   Focus on Waxholm Space (WHS) as Spatial Standard
  • 10:00 - 11:30   WHS demonstrations:  Waxholm Space, Fiducial Points, Transformations, Accessing the data
  • 11:30 - 12:00   Using Digital Atlasing Infrastructure (DAI): existing tools and resources for the community
  • 12:00 - 13:00   Lunch
  • 13:00 - 15:00   DAI tools demonstrations:  Scalable Brain Atlas, Whole Brain Catalog, MBAT, Allen Brain Atlas Brain Explorer
  • 15:00 - 15:20   Break
  • 15:20 - 16:00   Question and Discussion Session
  • 16:00 - 16:30   Building Digital Atlasing Infrastructure (DAI)
  • 16:30 - 18:00   DAI Infrastructure demonstrations:  Building a Hub (examples/how to); Underlying Infrastructure Standards, e.g., atlas spaces, WaxML

 

A recent publication describes the data acquisition and creation of the Waxholm Space atlas: G.A. Johnson, et al. Waxholm Space: An image-based reference for coordinating mouse brain research. Neuroimage (in press).

Filed under:
INCF Travel Grants

INCF supports neuroinformatics collaborations worldwide. Apply for a Travel Grant!