Upcoming Deadlines http://www.incf.org/deadlines Deadlines of neuroinformatics-related events offered by INCF daily 1 Upcoming Deadlines http://www.incf.org/deadlines http://www.incf.org/logo.png Application deadline for workshop announcement: Multi-scale Modeling in Computational Neuroscience http://www.incf.org/community/events/workshop-announcement-multi-scale-modeling-in-computational-neuroscience/application 2012/08/15: Application deadline for "workshop announcement: Multi-scale Modeling in Computational Neuroscience" (Luebeck, Germany) Multi-scale Modeling in Computational Neuroscience

To be held September 3rd – September 8th, 2012, University of Lübeck, Lübeck Germany

As the field of computational neuroscience continues to mature, it is clear that understanding the nervous system from a computational point of view will require modeling at multiple levels of scale from sub-cellular to systems and behavior. This hands-on workshop will consider both issues and techniques involved in modeling nervous systems at single levels of scale such as intracellular, single neuron and network models, as well as the opportunities for scientific discovery when models at these scales are linked. With a strong emphasis on hands on experience, the workshop will also include lectures focused on multi-scale modeling. The workshop is designed for advanced graduate students, postdoctoral fellows or faculty interesting in the practical application and development of multi-scale modeling techniques.

Through simulation projects, participants will have the opportunity to create realistic neural models from sub-cellular to network levels. This will provide an excellent opportunity for those with previous experience in neural simulation to learn new techniques and strategies for multi-scale modeling. Although participants can use the simulator of their choosing, this workshop will also introduce GENESIS 3 (G-3), a modular reimplementation of the GENESIS neural simulator that has capabilities uniquely suited for multi-scale modeling.

The international faculty includes:

Dr. James M. Bower (University of Texas System) who has been involved in the development of software tools for multi-scale modeling for 30 years.

Dr. David Beeman (University of Colorado) who has supported multi-scale modeling both as an instructor in numerous international courses in computational biology as well as in his role as director of the GENESIS users group.

Dr. Avrama Blackwell (George Mason University) who’s modeling and experimental expertise involves the investigation of molecular synaptic mechanisms.

Dr. Hugo Cornelis (Lead GENESIS developer) with expertise both in the design and construction of multi-scale simulation systems as well as modeling at single cell and network levels.

Dr. Volker Steuber (University of Hertfordshire) with expertise in biochemical, single cell, network and systems level modeling and analysis.

Mr. Armando Rodriguez (University of Texas San Antonio) an expert in interface design and interoperability in simulations systems.

Application deadline is August 15th.

Applications and inquiries should be sent to: gen3@gradschool.uni-luebeck.de

Please see the website at:

https://www.gradschool.uni-luebeck.de/index.php?id=366

for the latest detailed information.

The workshop is limited to 20 total participants and therefore, those interested should register as soon as possible. In addition to the scientific activities, several social activities have also been planned including a day spent on the shore of the Baltic Sea.

]]> 2012-05-17T07:44:04+02:00 2012-05-17T07:44:44+02:00 Hugo Cornelis Type: Workshop Topic: Computational neuroscience Early registration deadline for SSMBio 2012 http://www.incf.org/community/events/ssmbio-2012/early-registration 2012/06/02: Early registration deadline for "2012 INTERNATIONAL SUMMER SCHOOL IN METHODS IN BIOINFORMATICS" (Tarragona, Spain) SSMBio 2012 offers a broad and intensive series of lectures at different levels on bioinformatics. The students choose their preferred courses according to their interests and background. Instructors are top names in their respective fields. The School intends to help students initiate and foster their research career.

]]> 2012-04-23T10:39:10+02:00 2012-04-23T10:46:23+02:00 Pontus Holm Type: Course Topic: Genomics and genetics Early registration deadline for MBIA2012 http://www.incf.org/community/events/mbia2012/early-registration 2012/07/12: Early registration deadline for "MICCAI Workshop - Multimodal Brain Image Analysis (MBIA) - Call For Papers" (Nice, France) Multimodal Brain Image Analysis (MBIA) is the second in a series of workshops dedicated to move forward the state of the art in brain analysis using multimodal image data, in terms of analysis methodologies, algorithms, software systems, validation approaches, benchmark datasets, neuroscience, and clinical applications. MBIA is a forum for researchers to exchange ideas, data, and software, in order to speed up the development of innovative technologies for hypothesis testing and data-driven discovery in brain science.

Topics of interest include, but are not limited to:

* Multimodal brain data fusion methodologies
* Methods for modeling temporal brain dynamics
* Structural and functional brain network construction methods
* Brain connectivity analysis methods
* Multimodal brain image pattern classification methods
* Multimodal brain image visualization
* Multimodal brain data management methods
* Registration, segmentation, shape analysis, and signal processing methods for multimodal brain data
* Validation approaches and benchmark data generation
* Applications of multimodal methods in clinical diagnosis

The proceedings will be published in the Springer LNCS.

A "Best Paper Award" will be conferred to the author(s) of a paper selected by the Organizing Committee based on relevance, novelty and scientific contribution.

Important dates:

Deadline for Submission: June 1, 2012
Notification of Acceptance: July 5, 2012
Camera-Ready Submission: July 15, 2012
Early-Bird Registration: Until July 12, 2012
Workshop: October 1, 2012

For further information, please visit http://mbia2012.web.unc.edu

]]> 2012-04-17T16:14:34+02:00 2012-04-17T16:17:29+02:00 Pew-Thian Yap Type: Workshop Topic: General neuroinformatics Topic: Computational neuroscience Topic: Neuroimaging Paper submission deadline for MBIA2012 http://www.incf.org/community/events/mbia2012/paper-submission 2012/06/01: Paper submission deadline for "MICCAI Workshop - Multimodal Brain Image Analysis (MBIA) - Call For Papers" (Nice, France) Multimodal Brain Image Analysis (MBIA) is the second in a series of workshops dedicated to move forward the state of the art in brain analysis using multimodal image data, in terms of analysis methodologies, algorithms, software systems, validation approaches, benchmark datasets, neuroscience, and clinical applications. MBIA is a forum for researchers to exchange ideas, data, and software, in order to speed up the development of innovative technologies for hypothesis testing and data-driven discovery in brain science.

Topics of interest include, but are not limited to:

* Multimodal brain data fusion methodologies
* Methods for modeling temporal brain dynamics
* Structural and functional brain network construction methods
* Brain connectivity analysis methods
* Multimodal brain image pattern classification methods
* Multimodal brain image visualization
* Multimodal brain data management methods
* Registration, segmentation, shape analysis, and signal processing methods for multimodal brain data
* Validation approaches and benchmark data generation
* Applications of multimodal methods in clinical diagnosis

The proceedings will be published in the Springer LNCS.

A "Best Paper Award" will be conferred to the author(s) of a paper selected by the Organizing Committee based on relevance, novelty and scientific contribution.

Important dates:

Deadline for Submission: June 1, 2012
Notification of Acceptance: July 5, 2012
Camera-Ready Submission: July 15, 2012
Early-Bird Registration: Until July 12, 2012
Workshop: October 1, 2012

For further information, please visit http://mbia2012.web.unc.edu

]]> 2012-04-17T16:14:34+02:00 2012-04-17T16:17:29+02:00 Pew-Thian Yap Type: Workshop Topic: General neuroinformatics Topic: Computational neuroscience Topic: Neuroimaging Registration deadline for 18th Annual Fall Stereology Workshop http://www.incf.org/community/events/18th-annual-fall-stereology-workshop/registration 2012/08/10: Registration deadline for "18th Annual Fall Stereology Workshop "Applications of Unbiased Stereology to Neural Systems"" (New Orleans, Louisiana, United States) Background
The SRC is pleased to announce the 18th Annual Fall International Stereology Workshop to be held in New Orleans, LA in conjunction with the Annual Meeting of the Society For Neurosciences. Over two thousand professional bioscientists, students, and laboratory technicians have successfully completed this comprehensive training workshop on the principles and practices of design-based (unbiased) stereology applied to neurosciences.

Workshop Organizers
Organized by Peter R. Mouton, Ph.D., Professor of Stereology in the Department of Pathology & Cell Biology at the University of South Florida School of Medicine Tampa, FL. Dr. Mouton will be joined by the course co-director, Professor Arun Gokhale, Professor of Engineering and Materials Sciences at the Georgia Institute of Technology (Atlanta, GA). Drs Mouton and Gokhale have organized this Stereology Workshop since 1995.

Workshop Schedule
Start 8:30 AM Wednesday, October 10, 2012
End 5:00 PM Friday, October 12, 2012
Followed October 13 - 17, 2012 by the Annual Meeting of the Society for Neurosciences New Orleans, LA.

Safe and Secure Online Registration
Online registrations are accepted automatically on a first-come, first-served basis until all seats are reserved.

To foster an ideal balance for one-on-one interactions for participants and instructors, a limited number of seats will be available for the 18th Annual Fall 2012 Stereology Workshop. Thus, early registration is recommended.

Registration Fee for the 18th Annual Fall Stereology Workshop
The registration fee for the 2012 New Orleans Stereology Workshop is discounted 20% to honor the return of the course to New Orleans for the first time since Hurricane Katrina in 2005:
$850 for regular registration fee (prior to August 10, 2012).
$900 for late registration fee (after August 10, 2012).
The registration fee includes three days of instruction, refreshments; informal light drink and food reception on Day 2; one-on-one project designs with professional stereologists; computerized stereology demonstrations; copies of all PowerPoint slides presented and relevant reprints; and official Certificate of Completion signed by the course organizers.
See http://www.disector.com/18th-Annual-Stereology-Workshop-_c_35.html for the Cancellation Policy.

SRC Fellowship in Design-based (Unbiased) Stereology
One student will receive a merit-based waiver of the registration fee for the 2012 Stereology Workshop in New Orleans. For more information and a list of past fellowship winners, please see SRC Stereology Fellowship.

Accommodations
The Fall Stereology Workshop will be held at the Maison St. Charles located in the Historic Garden District of New Orleans directly across from the St. Charles streetcar line. The hotel address is 1319 St. Charles Avenue, New Orleans, LA 70130. Discounted weekday and weekend room rates are available during the Stereology Workshop and the SFN meeting on a first come first serve basis. Note to receive discounted room rates reservations must be made by 8/27/2012. For reservations and room rates call Kate Archer at (504) 522-0187 ext. 263. Be sure to mention you are attending the Stereology Workshop.

SRC Contact Information

Educational Program:
Amanda Elkins, Course/Workshop Coordinator; phone 410-739-1667
email: amanda@disector.com
Internet:http://www.disector.com

STEREOLOGER, Software-Hardware System for Unbiased Stereology:
Scott McElhiney, STEREOLOGER Specialist; phone 352-871-7045
email: scott@disector.com
Website: http://www.disector.com

Stereology Consultation and Core Facility:
Stereology Resource Center; phone 410-490-2036
email: src@disector.com
Website: http://www.disector.com

Contact information for the SRC clients and course participants is strictly confidential and not shared with any other organizations.

UNSUBSCRIBE:
The goal of this announcement is to keep scientists informed about upcoming opportunities for professional training in unbiased stereology. If you think that you’ve received this email in error, or do not wish to receive future training updates, send us an email with UNSUBSCRIBE in the subject line and we will remove your email address from our announcement list. Please accept our apology.

]]> 2012-04-16T21:27:11+02:00 2012-04-16T21:27:11+02:00 Peter Mouton Type: Conference Type: Workshop Topic: Clinical neuroscience Registration deadline for 2012 Brainhack http://www.incf.org/community/events/2012-brainhack/registration 2012/07/30: Registration deadline for "" (Leipzig, Germany) Brainhack is a unique event with the goals of fostering interdisciplinary collaboration and open neuroscience. The structure for the conference builds from the concepts of an unconference and hackathon. The term “unconference” refers to a conference structure in which most of the content is dynamically chosen by the participants – and a hackathon is an event where participants collaborate intensively on science-related projects. Brainhack will be a blend of both elements. On the last day, collaborative groups will give a brief presentation detailing their project, and the progress that was made over the course of the Brainhack.

We encourage participants across all disciplines related to neuroimaging to come prepared to present and discuss their research interests. Additionally, there will be the opportunity to present a poster during the first evening of the workshop.

Please visit: http://www.cbs.mpg.de/events/workshops/brainhack for more information and to register and prepare for the conference.

Registration Deadline: 30 July 2012 (However, we encourage early registration, as space will be limited).

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]]> 2012-04-04T11:13:39+02:00 2012-04-04T11:13:39+02:00 Pontus Holm Type: Conference Topic: Computational neuroscience Topic: Neuroimaging Paper submission deadline for MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labeling http://www.incf.org/community/events/miccai-2012-grand-challenge-and-workshop-on-multi-atlas-labeling/paper-submission 2012/06/12: Paper submission deadline for "MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labeling" (Nice, France) This workshop will provide a snapshot of the current progress in the field through extended discussions and provide researchers an opportunity to characterize their methods on standardized data in a grand challenge. The full training/testing datasets will be released for community use after the competition of this challenge.

]]> 2012-03-09T19:15:52+01:00 2012-03-09T19:16:39+01:00 Bennett Landman Type: Competition Type: Workshop Topic: Digital atlasing Topic: Neuroimaging Early registration deadline for 12th Granada Seminar on Computational and Statistical Physics http://www.incf.org/community/events/12th-granada-seminar-on-computational-and-statistical-physics/early-registration 2012/06/30: Early registration deadline for "12th Granada Seminar: Physics, Computation, and the Mind — Advances and Challenges at Interfaces" (Granada, Spain) 2012-02-16T09:22:07+01:00 2012-02-16T09:22:07+01:00 Pontus Holm Type: Conference Topic: Computational neuroscience Topic: Large scale modeling Abstract submission deadline for 12th Granada Seminar on Computational and Statistical Physics http://www.incf.org/community/events/12th-granada-seminar-on-computational-and-statistical-physics/abstract-submission 2012/07/31: Abstract submission deadline for "12th Granada Seminar: Physics, Computation, and the Mind — Advances and Challenges at Interfaces" (Granada, Spain) 2012-02-16T09:22:06+01:00 2012-02-16T09:22:07+01:00 Pontus Holm Type: Conference Topic: Computational neuroscience Topic: Large scale modeling Early registration deadline for BIOMAG 2012 http://www.incf.org/community/events/biomag-2012/early-registration 2012/05/30: Early registration deadline for "18th International Conference on Biomagnetism" (Paris, France) BIOMAG is covering all aspects of biomagnetism – a non-invasive technique for mapping the activity of the brain, the heart and other organs, with millisecond time accuracy. Every other year, BIOMAG attracts more than 500 researchers from 30 different countries interested in all aspects of brain and heart dynamics, from clinical and fundamental but also technical and methodological point of views.

The scientific program includes, but is not limited to, technological, methodological, clinical and fundamental research in biomagnetism. This year, we will highlight the quickly growing field of human brain dynamics, taking the MEG perspective but also taking advantage of the multiple methods (EEG, fMRI) and recording levels (intracranial EEG, LFP, unit activity) now available. Those issues will be developped in five keynote lectures, twenty symposia and poster sessions.

]]> 2012-01-27T00:09:43+01:00 2012-01-27T00:10:32+01:00 Olivier Bertrand Type: Conference Topic: Neuroimaging Topic: Electrophysiology