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This is a listing of people with an interest in neuroinformatics.

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Result: 52 - Digital atlasing

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Last name First name Affiliation Country
Hawrylycz Michael Allen Institute for Brain Science United States
Michael Hawrylycz
Email:
Research Area(s): Digital atlasing
Research focus: At the Allen Institute I am responsible for the direction of the informatics effort, including image processing, bioinformatics and data analysis.
INCF activities: Digital Brain Atlasing | Oversight Committee, Digital Brain Atlasing | Waxholm Space Task Force Lead, | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Ng Lydia Allen Institute for Brain Science United States
Email:
Research Area(s): Digital atlasing, Neuroimaging
Research focus: Application of image processing and informatics techniques to neuroscience problems
INCF activities: Digital Brain Atlasing | Waxholm Space Task Force, Digital Brain Atlasing | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Okamura-Oho Yuko BReNt-Brain Research Network and RIKEN Advanced Science Institute Japan
Yuko Okamura-Oho
Email:
Research Area(s): Digital atlasing, Genomics and genetics, Clinical neuroscience
Research focus: Using an original framework of transcriptome tomography, I am working with comprehensive gene expression mapping in the standard coordinate space of the mammalian brain.
Profile updated 2012-06-24 View profile page
Muller Eilif Blue Brain Project Switzerland
Eilif Muller
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Large scale modeling
Research focus: Unspecified
Profile updated 2011-01-20 View profile page
Bohland Jason Boston University United States
Jason Bohland
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Genomics and genetics
Research focus: My research includes studies of the circuit and molecular architecture of neural systems, neuroimaging, and computational modeling. An area of particular emphasis is in speech and language systems.
Profile updated 2011-04-07 View profile page
Vassallo Carlos Carlos Andrés Mugruza Vassallo United Kingdom
Email: Phone:
(+44) 1382 384926 (Office)
(+44) 1382 229993 (Fax)
Research Area(s): Computational neuroscience, Digital atlasing, Neuroimaging, Large scale modeling, Electrophysiology
Research focus: General: Understand at different levels computations in cognitive-dynamic mechanisms. Current: Study functional imbalance of activity levels in attention reorienting networks in controls and schizo
Profile updated 2011-07-13 View profile page
Ullmann Jeremy Centre for Advanced Imaging, University of Queensland Australia
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging
Research focus: Digital Atlasing, Neuroimaging, Zebrafish, Mouse, Morphometrics, Connectivity
Profile updated 2011-07-07 View profile page
Klein Arno Columbia University United States
Arno Klein
Email: Phone:
2125435821 (Office)
9175125627 (Office)
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging
Research focus: Automated anatomical labeling, feature extraction, and morphometric analysis of human brain MRI data.
Profile updated 2011-03-25 View profile page
Dickson James Department of Psychiatry, University of Pennsylvania United States
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Genomics and genetics, Infrastructural and portal services
Research focus: Neuroinformatics infrastructure.
Profile updated 2011-02-18 View profile page
Kötter Rolf Donders Inst. of Brain, Cognition and Behaviour Netherlands
Rolf Kötter
Email: Phone:
+31243614244 (Secretariat)
Research Area(s): Digital atlasing, Neuroimaging, Large scale modeling, Electrophysiology
Research focus: Connectivity of the primate brain
Profile updated 2012-06-15 View profile page
Bakker Rembrandt Donders Institute for Brain, Cognition and Behavior Netherlands
Rembrandt Bakker
Email:
Research Area(s): Digital atlasing, Electrophysiology
Research focus: Next generation CoCoMac database (Macaque Monkey anatomical connectivity data)
INCF activities: Digital Brain Atlasing | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Johnson G Duke University United States
G A Johnson
Email: Phone:
919 684 7754 (Office)
Research Area(s): Digital atlasing, Neuroimaging
Research focus: Dr. Johnson is director of the Duke CIVM. He is currently developing a digital atlas for mouse brain research based on very hi (21 micron) 3D MR data with correlated optical histology.
INCF activities: Digital Brain Atlasing | Oversight Committee, Digital Brain Atlasing | Waxholm Space Task Force
Profile updated 2011-11-17 View profile page
Ahammad Parvez HHMI Janelia Farm Research Campus
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Large scale modeling
Research focus: My research interests are in developing novel algorithms and statistical models for solving problems that arise in high-throughput biology, computational neuroscience and camera networks.
Profile updated 2010-10-14 View profile page
Hess Andreas I.f. Pharmacology Germany
Email: Phone:
+49 91318522801 (Laboratory)
Research Area(s): Computational neuroscience, Digital atlasing, Neuroimaging
Research focus: Animal Imaging
INCF activities: Digital Brain Atlasing | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Prodanov Dimiter IMEC Belgium
Dimiter Prodanov
Email: Phone:
+32 16 28 18 40 (Office)
Research Area(s): Digital atlasing, Brain machine interface, Electrophysiology, Infrastructural and portal services
Research focus: neurophysiology, neuroanatomy, microscopical image processing, brain imaging, ImageJ development
Profile updated 2009-12-10 View profile page
Abrams Mathew INCF Sweden
Email:
Research Area(s): General neuroinformatics, Digital atlasing
Research focus: neuroscience
Profile updated 2012-05-04 View profile page
Hill Sean INCF Sweden
Sean Hill
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Large scale modeling, Electrophysiology, Infrastructural and portal services
Research focus: Biologically-realistic models to study the role of emergent phenomena in information processing, network connectivity and synaptic plasticity in wakefulness and sleep.
Profile updated 2012-01-01 View profile page
Breeze Janis INCF Secretariat Sweden
Janis Breeze
Email: Phone:
+46 8 524 86919 (Office)
Research Area(s): Digital atlasing, Neuroimaging, Infrastructural and portal services
Research focus: Background: neuropsychiatric MRI research; data management and statistical analysis Current involvement at INCF: Digital Atlasing, Ontologies of Neural Structures, Standards for Datasharing
Profile updated 2011-05-06 View profile page
Burns Gully Information Sciences Institute, University of Southern California United States
Gully Burns
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Large scale modeling, Infrastructural and portal services
Research focus: We are concerned with building Knowledge Representation and Reasoning (KR&R) frameworks for biomedicine (including neuroscience) and populating them using text mining approaches.
Profile updated 2011-04-13 View profile page
Boline Jyl Informed Minds United States
Jyl Boline
Email:
Research Area(s): General neuroinformatics, Digital atlasing
Research focus: Jyl Boline is the Founder of Informed Minds and provides consultation for INCF to facilitate neuroinformatics program activities and collaborations among member countries. She was trained in behavioral electrophysiology and received her PhD at the University of Minnesota followed by a Sloan Postdoctoral fellowship at Caltech. Her more recent focus has been on collaborative neuroinformatics projects, including acting as the project manager for Bioinformatics Informatics Research Network (BIRN) at the Laboratory of Neuro Imaging (LONI) at UCLA.
INCF activities: Digital Brain Atlasing | Member, Ontologies of Neural Structures | Member
Profile updated 2011-11-01 View profile page
Gofflot Francoise Institute of Life Sciences-Université Catholique de Louvain Belgium
Francoise Gofflot
Email: Phone:
+32 10 472993 (Office)
Research Area(s): Digital atlasing, Genomics and genetics, Clinical neuroscience
Research focus: Quantitative and anatomical mapping of the gene expression in the prenatal, postnatal and adult central nervous system: towards identification of functional modules in the mouse brain
Profile updated 2010-04-08 View profile page
Longair Mark Institute of Neuroinformatics, UZH / ETHZ, Zürich Switzerland
Mark Longair
Email: Phone:
+41799221759 (Mobile)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Genomics and genetics, Infrastructural and portal services
Research focus: My main research interests are in computational neuroanatomy, especially the accurate reconstruction of neuronal topology and morophology from LM and EM images.
Profile updated 2010-05-14 View profile page
Cardona Albert Institute of Neuroinformatics, University of Zurich and ETH Zurich Switzerland
Albert Cardona
Email: Phone:
+41 44 63 53 031 (Office)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Genomics and genetics, Infrastructural and portal services
Research focus: Neural circuit reconstruction from serial section electron microscopy, in the central nervous system of Drosophila larvae.
Profile updated 2011-04-08 View profile page
Gomez-Molina Juan International Group of Neuroscience Colombia
Juan F Gomez-Molina
Email: Phone:
574 2300773 (Laboratory)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Large scale modeling, Brain machine interface, Electrophysiology, Clinical neuroscience
Research focus: Theoretical and Computational analysis of minimally invasive Neural Signals and Images. Theoretical Neuroimaging/EEG. Visual Sciences. Visuomotor Sciences. Non-invasive Electrophysiology.
Profile updated 2011-04-05 View profile page
Ibanez Luis KITWARE Inc. United States
Luis Ibanez
Email: Phone:
(Office)
Research Area(s): Digital atlasing, Neuroimaging
Research focus: Development of open source software for performing image segmentation and registration
INCF activities: | Waxholm Space Task Force
Profile updated 2011-11-17 View profile page
Krieger Patrik Karolinska Institutet Sweden
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Large scale modeling, Electrophysiology
Research focus: "What is it and where is it?" Using the rodent whisker system as a model we study in my group how the nervous system resolves this problem.
Profile updated 2010-05-01 View profile page
Verbeek Fons Leiden University, LIACS, Imaging & BioInformatics Netherlands
Email: Phone:
+31 71 527 5773 (Office)
Research Area(s): Computational neuroscience, Digital atlasing, Infrastructural and portal services
Research focus: Digital Atlasing, High throughput imaging, Zebrafish Imaging, Morphometrics
INCF activities: Digital Brain Atlasing | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Baldock Richard MRC Human Genetics Unit UK
Richard Baldock
Email: Phone:
+44 131 467 8434 (Office)
+44 131 467 8456 (Fax)
+44 131 332 2471 (Secretariat)
Research Area(s): Digital atlasing, Neuroimaging, Genomics and genetics
Research focus: The use of standard spatio-temporal and ontological frameworks for capturing and analysing biomedical spatial data such as the expression of genes during embryo development or neuronal organisation.
INCF activities: Digital Brain Atlasing | Oversight Committee
Profile updated 2011-11-17 View profile page
Burger Albert MRC and Heriot-Watt University United Kingdom
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Infrastructural and portal services
Research focus: Distributed Biomedical Informatics
INCF activities: Digital Brain Atlasing | Waxholm Space Task Force, | Digital Atlasing Infrastructure Task Force
Profile updated 2011-11-17 View profile page
Shcherbatyy Volodymyr Max Plank Institute for Biophysical Chemistry, Dept. Genes and Behavior Germany
Volodymyr Shcherbatyy
Email: Phone:
+49 551 201 2711 (Office)
Research Area(s): Digital atlasing
Research focus: A digital atlas of channelome expression patterns in the two-week-old rat brain
Profile updated 2012-04-26 View profile page
Egan Gary Monash Biomedical Imaging Australia
Gary Egan
Email: Phone:
+61 3 9902 9750 (Office)
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Clinical neuroscience
Research focus: Gary Egan is the Professor and Director of Monash Biomedical Imaging, at Monash University, Melbourne. He is also the Victoria node representative on the INCF Governing Board.
Profile updated 2013-04-15 View profile page
Sharda Megha National Brain Research Centre India
Email: Phone:
919810943202 (Mobile)
Research Area(s): Computational neuroscience, Digital atlasing, Neuroimaging, Clinical neuroscience
Research focus: I am interested in understanding mechanisms underlying speech and music processing in children with autism using structural and functional neuroimaging methods.
Profile updated 2013-03-05 View profile page
Wójcik Daniel Nencki Institute of Experimental Research Poland
Daniel Wójcik
Email: Phone:
+48 22 5892424 (Office)
+48 22 8225342 (Fax)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Electrophysiology, Infrastructural and portal services
Research focus: We are studying information processing in thalamo-cortico-thalamic loops in mammal sensory systems concentrating on the visual system of the cat and the somatosensory system of the rat. In particular we are interested in mechanisms of context-dependent modulation of information processing.   To achieve our goals we develop new methods of data analysis, test it on different models of the studied systems, and analyze the experimental data. We concentrate on analysis and modeling of electrophysiological data, both spike trains and local field potentials.
Profile updated 2010-02-26 View profile page
Papp Eszter Neural Systems and Graphics Computing Laboratory, University of Oslo Norway
Email:
Research Area(s): Digital atlasing, Neuroimaging
Research focus: Working on PhD project "Digital atlasing workflow for connectivity mapping in rodents: from automated image processing to brain-wide 3D reconstruction at histological resolution"
Profile updated 2011-04-08 View profile page
Worth Andrew Neuromorphometrics, Inc. United States
Andrew J Worth
Email: Phone:
+1 617-776-7844 (Office)
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging
Research focus: Neuroanatomical labeling of structural MRI brain scans
Profile updated 2011-07-05 View profile page
Poline Jean-Baptiste Neurospin-I2BM-CEA France
Jean-Baptiste Poline
Email: Phone:
33 (0) 1 69 08 7974 (Office)
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Genomics and genetics, Brain machine interface, Infrastructural and portal services
Research focus: Neuroimaging and genetic biostatistics and bioinformatics
INCF activities: Standards for Data Sharing | Oversight Committee, Standards for Data Sharing | Task Force Lead
Profile updated 2010-04-08 View profile page
Zaborszky Laszlo Rutgers University United States
Email: Phone:
1-973-353-3659 (Office)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging
Research focus: Our laboratory is interested in how the basal forebrain is organized to modulate sensory and higher order cognitive functions in the cerebral cortex.
INCF activities: Ontologies of Neural Structures | Structural Lexicon Task Force
Profile updated 2010-04-08 View profile page
Zaslavsky Ilya San Diego Supercomputer Center, UCSD United States
Ilya Zaslavsky
Email: Phone:
1-858-534-8342 (Office)
Research Area(s): Digital atlasing, Infrastructural and portal services
Research focus: Develop services and infrastructure for spatial integration of brain data
INCF activities: Digital Brain Atlasing | Digital Atlasing Infrastructure Task Force Lead
Profile updated 2011-11-17 View profile page
Furuichi Teiichi Tokyo Univesity of Science, Department of Science and Technology, Faculty of Applied Biological Science Japan
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Genomics and genetics
Research focus: Molecular mechanism of brain development and its disorders; Cerebellar development transcriptome database (CDT-DB) project; a mouse model of autism spectrum disorder
Profile updated 2012-12-18 View profile page
Stoner Richard UCSD United States
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Large scale modeling, Neuromorphic engineering, Infrastructural and portal services, Clinical neuroscience
Research focus: Automated analysis of neuropathology in autism postmortem imaging; using cloud computing
Profile updated 2013-03-27 View profile page
Martone Maryann UCSD, NCMIR United States
Maryann Martone
Email: Phone:
+1.858.822.0745 (Office)
+1.858.534.7497 (Fax)
Research Area(s): Digital atlasing, Neuroimaging, Infrastructural and portal services
Research focus: My work includes the central nervous system (CNS) morphology, protein localization, imaging of neurons and their processes, and neuronal alterations that occur as a consequence of ischemia.
INCF activities: Digital Brain Atlasing | Oversight Committee
Profile updated 2011-11-17 View profile page
Kennedy David Univ. of Massachusetts Medical Center United States
David Kennedy
Email: Phone:
()
Research Area(s): Digital atlasing, Neuroimaging
Research focus: Dr. Kennedy has extensive experience with the development of neuroinformatics resources and is a founding editor of Neuroinformatics.
INCF activities: Standards for Data Sharing | Oversight Committee, Standards for Data Sharing | Task Force Lead
Profile updated 2010-05-20 View profile page
Little David University of California, San Diego United States
Email: Phone:
8584560917 (Office)
Research Area(s): Digital atlasing
Research focus: Developing digital atlasing software. Implementing OGC WPS (Open Geospatial Consortium, Web Processing Service) specifications
Profile updated 2011-03-11 View profile page
Grethe Jeffrey University of California, San Diego United States
Email: Phone:
+1-858-822-0703 (Office)
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Genomics and genetics, Electrophysiology, Infrastructural and portal services
Research focus: My primary focus is on enabling collaborative research, data sharing and discovery through the application of advanced informatics approaches.
INCF activities: Standards for Data Sharing | Oversight Committee
Profile updated 2010-04-08 View profile page
Schenone Andrea University of Genoa Italy
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Electrophysiology, Infrastructural and portal services
Research focus: Interests mainly focused on neuroimaging and managing of multimodal data
Profile updated 2009-03-25 View profile page
Bjaalie Jan University of Oslo Norway
Jan G Bjaalie
Email: Phone:
+47 917 87 901 (Mobile)
+47 22 85 10 45 (Fax)
(Secretariat)
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Infrastructural and portal services
Research focus: Jan Bjaalie is Head of the Institute of Basic Medical Sciences, University of Oslo, Norway, and Special Advisor to the International Neuroinformatics Coordinating Facility, Karolinska Institute, Stockholm, Sweden. He received his M.D. and Ph.D. degrees in 1986 and 1990, respectively, and was appointed Associate Professor at the University of Oslo in 1992 and full Professor in 1997. His research group joined the Centre for Molecular Biology and Neuroscience, a Norwegian Centre of Excellence appointed by The Research Council of Norway, in 2002. His laboratory has discovered fundamental principles of sensory map transformations in large projection systems of the brain and has performed novel regional and whole brain atlasing and histological mapping. The laboratory has used ‘gold standard’ anatomical methods in combination with computerized methods for visualization and quantitative analyses, electrophysiology, and in vivo imaging, for studying systems level organization in the brain. In the context of this research, the group has developed a variety of software, including tools for 3-D reconstruction and advanced visualization of neuronal organization as well as database applications for neuroanatomical image data. The tools and databases of the laboratory are made available via the Rodent Brain Workbench, http://rbwb.org. Professor Bjaalie has been partner and coordinator of several EU funded projects and has collaborated extensively with leading laboratories in many countries. He serves on the board of several journals and is a member of the Neuroinformatics Committee of the Society for Neuroscience. He served as founding Executive Director of the International Neuroinformatics Coordinating Facility 2006 - 2008.
INCF activities: Digital Brain Atlasing | Oversight Committee
Profile updated 2011-11-17 View profile page
Gee James University of Pennsylvania United States
Email:
Research Area(s): General neuroinformatics, Digital atlasing, Neuroimaging, Clinical neuroscience
Research focus: The research group I direct, the Penn Image Computing and Science Laboratory (PICSL), works broadly in the field of biological and medical image analysis and computing.
INCF activities: | Waxholm Space Task Force
Profile updated 2012-05-17 View profile page
Wang Guang-Zhong University of Texas Southwestern Medical Center at Dallas
Email:
Research Area(s): General neuroinformatics, Computational neuroscience, Digital atlasing, Neuroimaging, Genomics and genetics, Large scale modeling, Brain machine interface
Research focus: decode the design principle of brain using molecular evolutionary approach
Profile updated 2011-09-12 View profile page
Kock Christiaan VU University Amsterdam Netherlands
Christiaan d Kock
Email:
Research Area(s): Digital atlasing, Electrophysiology
Research focus: My goal is to examine how cortical neurons encode sensory stimuli and how stimulus representation is affected by behavior. using in vivo electrophysiology and 3D reconstruction of recorded neurons.
Profile updated 2013-02-28 View profile page
Landman Bennett Vanderbilt University United States
Bennett Landman
Email:
Research Area(s): Computational neuroscience, Digital atlasing, Neuroimaging, Large scale modeling, Infrastructural and portal services, Clinical neuroscience
Research focus: I am interested in population characterization with magnetic resonance imaging, multi-parametric studies (DTI, sMRI, qMRI), and shape modeling and the informatics required to support these efforts.
Profile updated 2011-05-05 View profile page
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